Publications
A list of publications can also be found on pubmed and google scholar.
†Contributed Equally, *Corresponding Author
A list of publications can also be found on pubmed and google scholar.
†Contributed Equally, *Corresponding Author
A selection of highlights from our work
†Sarfatis, A., †Wang, Y., Twumasi-Ankrah, N., Moffitt, J.R.
bioRxiv doi: https://doi.org/10.1101/2024.06.27.601034 (2024)
†Cadinu, P., †Sivanathan, K.N., Misra, A., Xu, R.J., Mangani, D., Yang, E.,Rone, J.M., Tooley, K., Kye, Y., Bod, L., Geistlinger, L., Lee, T., Mertens, R.T., Ono, N., Wang, G., Sanmarco, L., Quintana, F.J., Anderson, A.C., Kuchroo, V.K., *Moffitt, J.R., *Nowarski, R.
Cell, 187 2010 (2024)
bioRxiv (2023)
Moffitt, J.R., Lundberg, E., Heyn, H.
Nature Reviews Genetics 23, 741 (2022)
†Sarfatis, A., †Wang, Y., Twumasi-Ankrah, N., Moffitt, J.R.
bioRxiv doi: https://doi.org/10.1101/2024.06.27.601034 (2024)
†Cadinu, P., †Sivanathan, K.N., Misra, A., Xu, R.J., Mangani, D., Yang, E.,Rone, J.M., Tooley, K., Kye, Y., Bod, L., Geistlinger, L., Lee, T., Mertens, R.T., Ono, N., Wang, G., Sanmarco, L., Quintana, F.J., Anderson, A.C., Kuchroo, V.K., *Moffitt, J.R., *Nowarski, R.
Cell, 187 2010 (2024)
bioRxiv (2023)
Wu, M., Zheng, W., Song, X., Bao, B., Wang, Y., Ramanan, D., Yang, D., Liu, R., Macbeth, J.C., Do, E.A., Andrade, W.A., Yang, T., Cho, H.S., Gazzaniga, F.S., Ilves, M., Coronado, D., Thomphson, C., Hang, S., Chiu, I.M, Moffitt, J.R., Hsiao, A., Mekalanos, J.J., Benoist, C., Kasper, D.L.
Cell, 187 897 (2024)
bioRxiv (2023)
†Watson, B., †Paul, B., Amir-Zilberstein, L., Segerstolpe, A., Rahman, R.U., Shih, A., Deguine, J., Xavier, R.J., *Moffitt, J.R., *Mullen, A.
bioRxiv doi: https://doi.org/10.1101/2024.02.02.578633 (2024)
Zhang, Y., Watson, B., Rattan, A., Lee, T., Chawla, S., Geistlinger, G., Guan, Y., Ma, M., Caldarone, B.J., Song, W., *Moffitt, J.R., *Carroll, M.C.
bioRxiv doi: https://doi.org/10.1101/2023.11.22.568325 (2023)
Bhattacherjee, A., Zhang, C., Watson,B., Djekidel, M.N., *Moffitt, J.R., *Zhang, Y.
Nature Neuroscience, 26 1880 (2023)
bioRxiv (2022)
Aw, E., Zhang, Y., Yalcin, E., Herrmann, U., Lin, S.L., Langston, K., Castrillion, C., Ma, M., Moffitt, J.R., Carroll, M.C.
Brain, Behavior, and Immunity, 114 511 (2023)
Choi, J., Li, J., Ferdous, S., Liang, Q., Moffitt, J.R., Chen, R.
Nature Communications 14 4929 (2023)
bioRxiv (2022)
Laubscher, E., Wang, X., Razin, N., Dougherty, T., Xu, R.J., Ombelets, L., Pao, E., Graf, W. Moffitt, J.R., Yue, Y., Van Valen, D.
bioRxiv doi: https://doi.org/10.1101/2023.09.03.556122 (2023)
Moffitt, J.R., Lundberg, E., Heyn, H.
Nature Reviews Genetics 23, 741 (2022)
Petukhov, V., Xu, R.J., Soldatov, R.A., Cadinu, P., Khodosevich, K., Moffitt, J.R., Kharchenko, P.V.
Nature Biotechnology doi: https://doi.org/10.1038/s41587-021-01044-w (2021)
Wheeler, M.A., Clark, I.C., Tjon, E.C., Li, Z., Zandee, S.E.J., Couturier, C.P., Watson, B.R., Scalisi, G., Alkwai, S., Rothhammer, V., Rotem, A., Heyman, J.A., Thaploo, S., Sanmarco, L.M., Ragoussis, J., Weitz, D.A., Petrecca, K., Moffitt, J.R., Becher, B., Antel, J.P., Prat, A., Quintana, F.J.
Nature 578 593 (2020)
Kagan, J., Moritz, R., Mazurchuk, R., Lee, J.H., Kharchenko, P., Rozenblatt-Rosen, O., Ruppin, E., Edfors, F., Ginty, F., Goltsev, Y., Wells, J., LaCava, J., Rieseterer, J., Germain, R., Shi, T., Chee, M., Budnik, B., Yates, J., Chait, B., Moffitt, J.R., Smith, R., Srivastava, S.
Journal of Proteome Research 19 1900 (2020)
Wang, G., Ang C.-E., Fan, J., Wang, A., Moffitt, J.R., Zhuang, X.
bioRxiv doi: https://doi.org/10.1101/2020.12.07.414060 (2020)
Xia, C., Babcock, H., *Moffitt, J.R., *Zhuang, X.
Scientific Reports 9 7721 (2019)
bioRxiv (2018)
†Moffitt, J.R., †Bambah-Mukku, D., Eichhorn, S.E., Vaughn, E., Shekhar, K., Perez, J.D., Rubinstein, N.D., Hao, J., Regev, A., Dulac, C. Zhuang, X.
Science eaau5324 (2018)
Wang, G., Moffitt, J.R., Zhuang, X.
Scientific Reports 8, 4847 (2018).
Emanuel, G., *Moffitt, J.R., *Zhuang, X.
Nature Methods 14, 1159-1162 (2017)
†Moffitt, J.R., †Hao, J., Bambah-Mukku, D., Lu, T., Dulac, C., Zhuang, X.
PNAS 113, 14456-14461 (2016)
*†Moffitt, J.R., †Hao, J., †Wang, G., Chen, K.H., Babcock, H.P., *Zhuang, X.
PNAS 113, 11046-11051 (2016)
Wang, S., Su, J.H., Beliveau, B., Bintu, B., Moffitt, J.R., Wu, C., Zhuang, X.
Science 353, 598-602 (2016)
Moffitt, J.R., Pandey, S., Boettiger, A.N., Wang, S., Zhuang, X.
eLife 5, 213065 (2016)
*Moffitt, J.R., *Zhuang, X.
Methods in Enzymology 572, 1-49 (2016)
Boettiger, A.N., Bintu, B., Moffitt, J.R., Wang, S., Beliveau, B., Fudenberg, G., Imakaev, M., Mirny, L.A., Wu, C., Zhuang, X.
Nature 529, 418-422 (2016)
†Chen, K.H., †Boettiger, A.N., †Moffitt, J.R., Wang, S., Zhuang, X.
Science 348, aaa6090 (2015)
Wang S., Moffitt, J.R., Dempsey, G.T., Xie, X.S., Zhuang, X.
PNAS 111, 8452-8457 (2014)
Osseforth, C., Moffitt, J.R., Schermelleh, L., Michaelis J.
Optics Express 22, 7028-7039 (2014)
*Moffitt, J.R. and *Bustamante, C.
FEBS Journal 281, 498-517 (2014)
†Babcock, H., †Moffitt, J.R., and Zhuang, X.
Optics Express 21, 28583-28596 (2013)
Teng, S., †Mukherji, S., †Moffitt, J.R., †de Buyl, S., and O’Shea, E. K.
Science 340, 737-740 (2013)
Glaser, J.I., Zamft, B.M., Marblestone, A.H., Moffitt, J.R., Tyo, K., Boyden, E.S., Church, G., and Kording, K.P.
PLOS Computational Biology 9, e1003145 (2013)
Chistol, G., Liu, S., Hetherington, C.L., Moffitt, J.R., Grimes, S., Jardine, P.J., and Bustamante, C.
Cell 151, 1017 (2012)
†Moffitt, J.R., †Lee, J.B., and Cluzel, P.
Lab on a Chip 12, 1487 (2012)
Hetherington, C. L., Chistol, G., Moffitt, J.R., and Bustamante, C.
in Comprehensive Biophysics, Ed. Goldman, Y., 4, 420 (2012)
Cheng, W., Arunajadai, S.G., Moffitt, J.R., Tinoco, I. Jr., and Bustamante, C.
Science 23, 1746 (2011)
*Moffitt, J.R., Osseforth, C., and *Michaelis, J.
Optics Express 19, 4242 (2011)
Moffitt, J.R., Chemla, Y.R., and Bustamante, C.
PNAS 107, 15739 (2010)
Moffitt, J.R., Chemla, Y.R., and Bustamante, C.
Methods in Enzymology 475, 221 (2010)
Yu, J., Moffitt, J.R., Hetherington, C.L., Bustamante, C., and Oster, G.
Journal of Molecular Biology 400, 186 (2010)
†Aathavan, K., †Politzer, A.T., †Kaplan, A., †Moffitt, J.R., Chemla, Y.R., Grimes, S., Jardine, P.J., Anderson, D.L., and Bustamante, C.
Nature 461, 669 (2009)
†Moffitt, J.R., †Chemla, Y.R., Aathavan, K., Grimes, S., Jardine, P.J., Anderson, D.L., and Bustamante, C.
Nature 457, 446 (2009)
Michaelis, J., Muschielok, A., Andrecka, J., Kügel, W., and Moffitt, J.R.
Physics of Life 6, 250 (2009)
Bustamante, C. and Moffitt, J.R.
in Proceedings of the Nobel Symposium: Single Molecule Spectroscopy in Chemistry, Physics and Biology, Sånga Säby 96, 237 (2009)
Bustamante, C., and Moffitt, J.R.
in RNA polymerases as a molecular motors, Eds. Strict, T. and Buc, H., RSC (2009)
†Chemla, Y.R., †Moffitt, J.R., and Bustamante, C.
J. Chem. Phys. B 112, 6026 (2008)
Moffitt, J.R., Chemla, Y.R., Smith, S.B., and Bustamante, C.
Ann. Rev. Biochem. 77, 205 (2008)
Bustamante, C., Chemla, Y.R., and Moffitt, J.R.
in Single-Molecule Techniques: A Laboratory Manual, Eds. Selvin, P.J. and Ha, T., CSHL (2008)
†Moffitt, J.R., †Chemla, Y.R., Izhaky, D., and Bustamante, C.
PNAS 103, 9006 (2006)
Moffitt, J.R., Macdonald, P., Lindner, J.F.
Physical Review E 70, 016203 (2004)
Palmer, M.A., Dobbins, J.A., Rock, B.Y., Strohman, C.R., and Moffitt, J.R.
Proc. of the 2003 Part. Accel. Conf. 2473 (2003)